PROBer is the first unified probabilistic framework for the analysis of a diverse set of sequencing-based ‘toeprinting’ assays. These assays are used to probe RNA secondary …
DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) is a de novo transcriptome assembly evaluation package, which contains two components, …
CSEM (ChIP-Seq multi-read allocation using Expectation-Maximization) is one of the first ChIP-Seq multi-mapping read allocators, which allows multi-reads to be utilized by peak …
RSEM (RNA-Seq by Expectation-Maximization) is a widely-used RNA-Seq transcript quantification tool. RSEM papers are cited over 5,300 times. It was served in nationwide consortium …
