Python

Python

NMF-Torch

NMF-Torch is a PyTorch implementation on Non-negative Matrix Factorization. It provides both batch and online modes for updating the matrices during computation, and aims for high …

avatar
Dr. Bo Li
•
Read more
Visualizer

Cirrocumulus

Cirrocumulus is an interactive visualization tool for large-scale single-cell genomics data, with the following features: Visualize datasets in h5ad, 10x h5, Xenium, loom, Seurat, …

avatar
Dr. Bo Li
•
Read more
Python

Harmony-Pytorch

Harmony-PyTorch is an efficient PyTorch implementation of Harmony algorithm, used for data integration and batch correction. It has been adopted by rapids-singlecell (a …

avatar
Dr. Bo Li
•
Read more
Python

Pegasus

Pegasus is a tool for analyzing transcriptomes of millions of single cells. It is a command line tool, a python package and a base for Cloud-based analysis workflows.

avatar
Dr. Bo Li
•
Read more